Begin at the beginning: A BAC-end view of the passion fruit (Passiflora) genome.
Identifieur interne : 002353 ( Main/Exploration ); précédent : 002352; suivant : 002354Begin at the beginning: A BAC-end view of the passion fruit (Passiflora) genome.
Auteurs : Anselmo Azevedo Santos ; Helen Alves Penha ; Arnaud Bellec ; Carla De Freitas Munhoz ; Andrea Pedrosa-Harand ; Hélène Bergès ; Maria Lucia Carneiro Vieira [Brésil]Source :
- BMC genomics [ 1471-2164 ] ; 2014.
Descripteurs français
- KwdFr :
- Cadres ouverts de lecture (génétique), Cartographie chromosomique (MeSH), Chromosomes artificiels de bactérie (génétique), Génome végétal (génétique), Génomique (méthodes), Passiflora (génétique), Répétitions microsatellites (génétique), Rétroéléments (génétique), Éléments transposables d'ADN (génétique).
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA Transposable Elements, Retroelements.
- genetics : Chromosomes, Artificial, Bacterial, Genome, Plant, Microsatellite Repeats, Open Reading Frames, Passiflora.
- methods : Genomics.
- Chromosome Mapping.
Abstract
BACKGROUND
The passion fruit (Passiflora edulis) is a tropical crop of economic importance both for juice production and consumption as fresh fruit. The juice is also used in concentrate blends that are consumed worldwide. However, very little is known about the genome of the species. Therefore, improving our understanding of passion fruit genomics is essential and to some degree a pre-requisite if its genetic resources are to be used more efficiently. In this study, we have constructed a large-insert BAC library and provided the first view on the structure and content of the passion fruit genome, using BAC-end sequence (BES) data as a major resource.
RESULTS
The library consisted of 82,944 clones and its levels of organellar DNA were very low. The library represents six haploid genome equivalents, and the average insert size was 108 kb. To check its utility for gene isolation, successful macroarray screening experiments were carried out with probes complementary to eight Passiflora gene sequences available in public databases. BACs harbouring those genes were used in fluorescent in situ hybridizations and unique signals were detected for four BACs in three chromosomes (n=9). Then, we explored 10,000 BES and we identified reads likely to contain repetitive mobile elements (19.6% of all BES), simple sequence repeats and putative proteins, and to estimate the GC content (~42%) of the reads. Around 9.6% of all BES were found to have high levels of similarity to plant genes and ontological terms were assigned to more than half of the sequences analysed (940). The vast majority of the top-hits made by our sequences were to Populus trichocarpa (24.8% of the total occurrences), Theobroma cacao (21.6%), Ricinus communis (14.3%), Vitis vinifera (6.5%) and Prunus persica (3.8%).
CONCLUSIONS
We generated the first large-insert library for a member of Passifloraceae. This BAC library provides a new resource for genetic and genomic studies, as well as it represents a valuable tool for future whole genome study. Remarkably, a number of BAC-end pair sequences could be mapped to intervals of the sequenced Arabidopsis thaliana, V. vinifera and P. trichocarpa chromosomes, and putative collinear microsyntenic regions were identified.
DOI: 10.1186/1471-2164-15-816
PubMed: 25260959
PubMed Central: PMC4189760
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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last="Penha">Helen Alves Penha</name></author><author><name sortKey="Bellec, Arnaud" sort="Bellec, Arnaud" uniqKey="Bellec A" first="Arnaud" last="Bellec">Arnaud Bellec</name></author><author><name sortKey="Munhoz, Carla De Freitas" sort="Munhoz, Carla De Freitas" uniqKey="Munhoz C" first="Carla De Freitas" last="Munhoz">Carla De Freitas Munhoz</name></author><author><name sortKey="Pedrosa Harand, Andrea" sort="Pedrosa Harand, Andrea" uniqKey="Pedrosa Harand A" first="Andrea" last="Pedrosa-Harand">Andrea Pedrosa-Harand</name></author><author><name sortKey="Berges, Helene" sort="Berges, Helene" uniqKey="Berges H" first="Hélène" last="Bergès">Hélène Bergès</name></author><author><name sortKey="Vieira, Maria Lucia Carneiro" sort="Vieira, Maria Lucia Carneiro" uniqKey="Vieira M" first="Maria Lucia Carneiro" last="Vieira">Maria Lucia Carneiro Vieira</name><affiliation wicri:level="4"><nlm:affiliation>Departamento de Genética, Universidade de São Paulo, Escola Superior de Agricultura "Luiz de Queiroz", P,O, Box 83, 13400-970 Piracicaba, Brazil. mlcvieir@usp.br.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Departamento de Genética, Universidade de São Paulo, Escola Superior de Agricultura "Luiz de Queiroz", P,O, Box 83, 13400-970 Piracicaba</wicri:regionArea><orgName type="university">Université de São Paulo</orgName><placeName><settlement type="city">São Paulo</settlement><region type="state">État de São Paulo</region></placeName></affiliation></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term><term>Chromosomes, Artificial, Bacterial (genetics)</term><term>DNA Transposable Elements (genetics)</term><term>Genome, Plant (genetics)</term><term>Genomics (methods)</term><term>Microsatellite 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scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Cadres ouverts de lecture</term><term>Chromosomes artificiels de bactérie</term><term>Génome végétal</term><term>Passiflora</term><term>Répétitions microsatellites</term><term>Rétroéléments</term><term>Éléments transposables d'ADN</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Genomics</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Génomique</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>The passion fruit (Passiflora edulis) is a tropical crop of economic importance both for juice production and consumption as fresh fruit. The juice is also used in concentrate blends that are consumed worldwide. However, very little is known about the genome of the species. Therefore, improving our understanding of passion fruit genomics is essential and to some degree a pre-requisite if its genetic resources are to be used more efficiently. In this study, we have constructed a large-insert BAC library and provided the first view on the structure and content of the passion fruit genome, using BAC-end sequence (BES) data as a major resource.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>The library consisted of 82,944 clones and its levels of organellar DNA were very low. The library represents six haploid genome equivalents, and the average insert size was 108 kb. To check its utility for gene isolation, successful macroarray screening experiments were carried out with probes complementary to eight Passiflora gene sequences available in public databases. BACs harbouring those genes were used in fluorescent in situ hybridizations and unique signals were detected for four BACs in three chromosomes (n=9). Then, we explored 10,000 BES and we identified reads likely to contain repetitive mobile elements (19.6% of all BES), simple sequence repeats and putative proteins, and to estimate the GC content (~42%) of the reads. Around 9.6% of all BES were found to have high levels of similarity to plant genes and ontological terms were assigned to more than half of the sequences analysed (940). The vast majority of the top-hits made by our sequences were to Populus trichocarpa (24.8% of the total occurrences), Theobroma cacao (21.6%), Ricinus communis (14.3%), Vitis vinifera (6.5%) and Prunus persica (3.8%).</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>We generated the first large-insert library for a member of Passifloraceae. This BAC library provides a new resource for genetic and genomic studies, as well as it represents a valuable tool for future whole genome study. Remarkably, a number of BAC-end pair sequences could be mapped to intervals of the sequenced Arabidopsis thaliana, V. vinifera and P. trichocarpa chromosomes, and putative collinear microsyntenic regions were identified.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25260959</PMID><DateCompleted><Year>2015</Year><Month>07</Month><Day>02</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN><JournalIssue CitedMedium="Internet"><Volume>15</Volume><PubDate><Year>2014</Year><Month>Sep</Month><Day>26</Day></PubDate></JournalIssue><Title>BMC genomics</Title><ISOAbbreviation>BMC Genomics</ISOAbbreviation></Journal><ArticleTitle>Begin at the beginning: A BAC-end view of the passion fruit (Passiflora) genome.</ArticleTitle><Pagination><MedlinePgn>816</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2164-15-816</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The passion fruit (Passiflora edulis) is a tropical crop of economic importance both for juice production and consumption as fresh fruit. The juice is also used in concentrate blends that are consumed worldwide. However, very little is known about the genome of the species. Therefore, improving our understanding of passion fruit genomics is essential and to some degree a pre-requisite if its genetic resources are to be used more efficiently. In this study, we have constructed a large-insert BAC library and provided the first view on the structure and content of the passion fruit genome, using BAC-end sequence (BES) data as a major resource.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">The library consisted of 82,944 clones and its levels of organellar DNA were very low. The library represents six haploid genome equivalents, and the average insert size was 108 kb. To check its utility for gene isolation, successful macroarray screening experiments were carried out with probes complementary to eight Passiflora gene sequences available in public databases. BACs harbouring those genes were used in fluorescent in situ hybridizations and unique signals were detected for four BACs in three chromosomes (n=9). Then, we explored 10,000 BES and we identified reads likely to contain repetitive mobile elements (19.6% of all BES), simple sequence repeats and putative proteins, and to estimate the GC content (~42%) of the reads. Around 9.6% of all BES were found to have high levels of similarity to plant genes and ontological terms were assigned to more than half of the sequences analysed (940). The vast majority of the top-hits made by our sequences were to Populus trichocarpa (24.8% of the total occurrences), Theobroma cacao (21.6%), Ricinus communis (14.3%), Vitis vinifera (6.5%) and Prunus persica (3.8%).</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">We generated the first large-insert library for a member of Passifloraceae. This BAC library provides a new resource for genetic and genomic studies, as well as it represents a valuable tool for future whole genome study. Remarkably, a number of BAC-end pair sequences could be mapped to intervals of the sequenced Arabidopsis thaliana, V. vinifera and P. trichocarpa chromosomes, and putative collinear microsyntenic regions were identified.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Santos</LastName><ForeName>Anselmo Azevedo</ForeName><Initials>AA</Initials></Author><Author ValidYN="Y"><LastName>Penha</LastName><ForeName>Helen Alves</ForeName><Initials>HA</Initials></Author><Author ValidYN="Y"><LastName>Bellec</LastName><ForeName>Arnaud</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Munhoz</LastName><ForeName>Carla de Freitas</ForeName><Initials>Cde F</Initials></Author><Author ValidYN="Y"><LastName>Pedrosa-Harand</LastName><ForeName>Andrea</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Bergès</LastName><ForeName>Hélène</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Vieira</LastName><ForeName>Maria Lucia Carneiro</ForeName><Initials>ML</Initials><AffiliationInfo><Affiliation>Departamento de Genética, Universidade de São Paulo, Escola Superior de Agricultura "Luiz de Queiroz", P,O, Box 83, 13400-970 Piracicaba, Brazil. mlcvieir@usp.br.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>09</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Genomics</MedlineTA><NlmUniqueID>100965258</NlmUniqueID><ISSNLinking>1471-2164</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004251">DNA Transposable 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MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016366" MajorTopicYN="N">Open Reading Frames</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029598" MajorTopicYN="N">Passiflora</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018626" MajorTopicYN="N">Retroelements</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>05</Month><Day>13</Day></PubMedPubDate><PubMedPubDate 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2011;6(3):e18212</Citation><ArticleIdList><ArticleId IdType="pubmed">21464897</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010;11:618</Citation><ArticleIdList><ArticleId IdType="pubmed">21054843</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2011;12:292</Citation><ArticleIdList><ArticleId IdType="pubmed">21645357</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2012 Jan;78(1-2):95-107</Citation><ArticleIdList><ArticleId IdType="pubmed">22101470</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Phylogenet Evol. 2004 Apr;31(1):379-96</Citation><ArticleIdList><ArticleId IdType="pubmed">15019632</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2008;9:423</Citation><ArticleIdList><ArticleId IdType="pubmed">18801166</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2004 Feb;14(2):319-26</Citation><ArticleIdList><ArticleId IdType="pubmed">14718376</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biomed Biotechnol. 2011;2011:476723</Citation><ArticleIdList><ArticleId IdType="pubmed">21234344</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2002 Sep 13;3(10):RESEARCH0053</Citation><ArticleIdList><ArticleId IdType="pubmed">12372141</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome. 1997 Feb;40(1):138-42</Citation><ArticleIdList><ArticleId IdType="pubmed">18464813</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2007 Jul 1;23(13):1683-5</Citation><ArticleIdList><ArticleId IdType="pubmed">17463017</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2007 Apr;114(6):1081-90</Citation><ArticleIdList><ArticleId IdType="pubmed">17287974</ArticleId></ArticleIdList></Reference><Reference><Citation>Brief Bioinform. 2013 Mar;14(2):178-92</Citation><ArticleIdList><ArticleId IdType="pubmed">22517427</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2010;10:98</Citation><ArticleIdList><ArticleId IdType="pubmed">20507561</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Mar 1;26(5):589-95</Citation><ArticleIdList><ArticleId IdType="pubmed">20080505</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Genet. 2009 Nov;5(11):e1000728</Citation><ArticleIdList><ArticleId IdType="pubmed">19936048</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2004 Jan;16(1):114-25</Citation><ArticleIdList><ArticleId IdType="pubmed">14671025</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2005 Sep 15;21(18):3674-6</Citation><ArticleIdList><ArticleId IdType="pubmed">16081474</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformation. 2005 Nov 22;1(2):64-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17597856</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2007;7:29</Citation><ArticleIdList><ArticleId IdType="pubmed">17562019</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86</Citation><ArticleIdList><ArticleId IdType="pubmed">22110026</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2008 Aug;67(6):581-8</Citation><ArticleIdList><ArticleId IdType="pubmed">18521706</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Cells. 2006 Dec 31;22(3):300-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17202858</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2005 Aug 11;436(7052):793-800</Citation><ArticleIdList><ArticleId IdType="pubmed">16100779</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Res Notes. 2012;5:185</Citation><ArticleIdList><ArticleId IdType="pubmed">22524198</ArticleId></ArticleIdList></Reference><Reference><Citation>Chromosome Res. 2010 Jun;18(4):503-14</Citation><ArticleIdList><ArticleId IdType="pubmed">20490650</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2006 Jan;16(1):140-7</Citation><ArticleIdList><ArticleId IdType="pubmed">16344555</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2013 Jan;81(1-2):139-47</Citation><ArticleIdList><ArticleId IdType="pubmed">23161199</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Plant Sci. 2014 Feb 01;2(2):null</Citation><ArticleIdList><ArticleId IdType="pubmed">25202599</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2005 Jun 15;21(12):2812-3</Citation><ArticleIdList><ArticleId IdType="pubmed">15814554</ArticleId></ArticleIdList></Reference><Reference><Citation>Food Chem Toxicol. 2007 Apr;45(4):656-61</Citation><ArticleIdList><ArticleId IdType="pubmed">17169472</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2008;8:34</Citation><ArticleIdList><ArticleId IdType="pubmed">18405374</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biomed Biotechnol. 2008;2008:231904</Citation><ArticleIdList><ArticleId IdType="pubmed">18475318</ArticleId></ArticleIdList></Reference><Reference><Citation>Comp Funct Genomics. 2012;2012:510549</Citation><ArticleIdList><ArticleId IdType="pubmed">22536117</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biomed Biotechnol. 2010;2010. pii: 457137. doi: 10.1155/2011/457137</Citation><ArticleIdList><ArticleId IdType="pubmed">20827418</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2010 Sep;28(9):951-6</Citation><ArticleIdList><ArticleId IdType="pubmed">20729833</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2011;6(1):e16214</Citation><ArticleIdList><ArticleId IdType="pubmed">21283709</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Res Notes. 2010 Aug 11;3:225</Citation><ArticleIdList><ArticleId IdType="pubmed">20701751</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2009 Mar;281(3):273-88</Citation><ArticleIdList><ArticleId IdType="pubmed">19104839</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2000 Dec 14;408(6814):796-815</Citation><ArticleIdList><ArticleId IdType="pubmed">11130711</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2011;12:137</Citation><ArticleIdList><ArticleId IdType="pubmed">21375742</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2000 Jan;10(1):129-36</Citation><ArticleIdList><ArticleId IdType="pubmed">10645957</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2011;11:3</Citation><ArticleIdList><ArticleId IdType="pubmed">21208460</ArticleId></ArticleIdList></Reference><Reference><Citation>Protein Cell. 2013 Jul;4(7):493-501</Citation><ArticleIdList><ArticleId IdType="pubmed">23794032</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2000 Jan 1;28(1):141-5</Citation><ArticleIdList><ArticleId IdType="pubmed">10592205</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2003 Aug;90(8):1229-38</Citation><ArticleIdList><ArticleId IdType="pubmed">21659223</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2001 Mar;125(3):1283-92</Citation><ArticleIdList><ArticleId IdType="pubmed">11244109</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 1992 Nov;8(11):372-3</Citation><ArticleIdList><ArticleId IdType="pubmed">1440872</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2010 Oct;42(10):833-9</Citation><ArticleIdList><ArticleId IdType="pubmed">20802477</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2006 Jul;276(1):1-12</Citation><ArticleIdList><ArticleId IdType="pubmed">16703363</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2000 May;25(1):25-9</Citation><ArticleIdList><ArticleId IdType="pubmed">10802651</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 1998 Mar;8(3):175-85</Citation><ArticleIdList><ArticleId IdType="pubmed">9521921</ArticleId></ArticleIdList></Reference><Reference><Citation>Hereditas. 2004;141(1):31-8</Citation><ArticleIdList><ArticleId IdType="pubmed">15383069</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1997 Sep 1;25(17):3389-402</Citation><ArticleIdList><ArticleId IdType="pubmed">9254694</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2005 Feb;169(2):945-53</Citation><ArticleIdList><ArticleId IdType="pubmed">15489521</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2004 Jan 1;32(Database issue):D360-3</Citation><ArticleIdList><ArticleId IdType="pubmed">14681434</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2002 Aug;161(4):1661-72</Citation><ArticleIdList><ArticleId IdType="pubmed">12196409</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2007 Sep 27;449(7161):463-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17721507</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Brésil</li></country><region><li>État de São Paulo</li></region><settlement><li>São Paulo</li></settlement><orgName><li>Université de São Paulo</li></orgName></list><tree><noCountry><name sortKey="Bellec, Arnaud" sort="Bellec, Arnaud" uniqKey="Bellec A" first="Arnaud" last="Bellec">Arnaud Bellec</name><name sortKey="Berges, Helene" sort="Berges, Helene" uniqKey="Berges H" first="Hélène" last="Bergès">Hélène Bergès</name><name sortKey="Munhoz, Carla De Freitas" sort="Munhoz, Carla De Freitas" uniqKey="Munhoz C" first="Carla De Freitas" last="Munhoz">Carla De Freitas Munhoz</name><name sortKey="Pedrosa Harand, Andrea" sort="Pedrosa Harand, Andrea" uniqKey="Pedrosa Harand A" first="Andrea" last="Pedrosa-Harand">Andrea Pedrosa-Harand</name><name sortKey="Penha, Helen Alves" sort="Penha, Helen Alves" uniqKey="Penha H" first="Helen Alves" last="Penha">Helen Alves Penha</name><name sortKey="Santos, Anselmo Azevedo" sort="Santos, Anselmo Azevedo" uniqKey="Santos A" first="Anselmo Azevedo" last="Santos">Anselmo Azevedo Santos</name></noCountry><country name="Brésil"><region name="État de São Paulo"><name sortKey="Vieira, Maria Lucia Carneiro" sort="Vieira, Maria Lucia Carneiro" uniqKey="Vieira M" 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